ScType: Fully-automated cell type identification of scRNA-seq profiles


ScType is a tool for fully-automated cell type identification from single-cell RNA-seq data. ScType provides a complete pipeline for single-cell RNA-seq data analysis (including data processing, normalization and clustering) and cell-type annotation.

ScType computational algorithm together with a comprehensive marker database enables one to identify marker genes that are uniquely expressed in any given cell cluster and are specific to a particular cell type within a tissue.

Please use the following citation as a general reference for ScType [ be filled]

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